J5_4YZV_015
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4YZV|1|YA|A|532, 4YZV|1|YA|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4YZV_015 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0803
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4YZV|1|YA|C|531
4YZV|1|YA|A|532
4YZV|1|YA|G|533
*
4YZV|1|YA|C|560
4YZV|1|YA|G|561
4YZV|1|YA|U|562
4YZV|1|YA|G|563
4YZV|1|YA|C|564
*
4YZV|1|YA|G|577
4YZV|1|YA|A|578
4YZV|1|YA|G|579
*
4YZV|1|YA|C|1261
4YZV|1|YA|A|1262
*
4YZV|1|YA|U|2017
4YZV|1|YA|G|2018
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YF
- 50S ribosomal protein L4
- Chain YU
- 50S ribosomal protein L20
- Chain YV
- 50S ribosomal protein L21
- Chain YW
- 50S ribosomal protein L22
Coloring options: