J5_4Z3S_001

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4Z3S|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4Z3S_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0446

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4Z3S|1|1A|C|47
4Z3S|1|1A|G|48
4Z3S|1|1A|A|49
4Z3S|1|1A|U|50
4Z3S|1|1A|G|51
4Z3S|1|1A|A|52
4Z3S|1|1A|A|53
4Z3S|1|1A|G|54
*
4Z3S|1|1A|C|116
4Z3S|1|1A|G|117
4Z3S|1|1A|A|118
4Z3S|1|1A|A|119
4Z3S|1|1A|U|120
4Z3S|1|1A|G|121
*
4Z3S|1|1A|C|130
4Z3S|1|1A|G|131
*
4Z3S|1|1A|C|148
4Z3S|1|1A|A|149
4Z3S|1|1A|C|150
*
4Z3S|1|1A|G|176
4Z3S|1|1A|G|177
4Z3S|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23