J5_4ZER_003
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4ZER|1|1A|A|557, 4ZER|1|1A|U|585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4ZER_003 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0696
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4ZER|1|1A|C|556
4ZER|1|1A|A|557
4ZER|1|1A|G|558
*
4ZER|1|1A|C|583
4ZER|1|1A|G|584
4ZER|1|1A|U|585
4ZER|1|1A|G|586
4ZER|1|1A|C|587
*
4ZER|1|1A|G|600
4ZER|1|1A|A|601
4ZER|1|1A|G|602
*
4ZER|1|1A|C|1307
4ZER|1|1A|A|1308
*
4ZER|1|1A|U|2039
4ZER|1|1A|G|2040
Current chains
- Chain 1A
- 23s ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
- Chain 1W
- 50S ribosomal protein L22
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