J5_4ZSN_003

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4ZSN|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4ZSN_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.069

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4ZSN|1|RA|C|47
4ZSN|1|RA|G|48
4ZSN|1|RA|A|49
4ZSN|1|RA|U|50
4ZSN|1|RA|G|51
4ZSN|1|RA|A|52
4ZSN|1|RA|A|53
4ZSN|1|RA|G|54
*
4ZSN|1|RA|C|116
4ZSN|1|RA|G|117
4ZSN|1|RA|A|118
4ZSN|1|RA|A|119
4ZSN|1|RA|U|120
4ZSN|1|RA|G|121
*
4ZSN|1|RA|C|130
4ZSN|1|RA|G|131
*
4ZSN|1|RA|C|148
4ZSN|1|RA|A|149
4ZSN|1|RA|C|150
*
4ZSN|1|RA|G|176
4ZSN|1|RA|G|177
4ZSN|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23