J5_5AKA_004

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

5AKA|1|B|U|1758, 5AKA|1|B|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5AKA_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0567

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|G|1674
5AKA|1|B|C|1675
5AKA|1|B|A|1676
5AKA|1|B|A|1677
5AKA|1|B|A|1678
5AKA|1|B|A|1679
5AKA|1|B|U|1680
5AKA|1|B|G|1681
5AKA|1|B|G|1682
*
5AKA|1|B|C|1706
5AKA|1|B|G|1707
*
5AKA|1|B|U|1751
5AKA|1|B|C|1752
*
5AKA|1|B|G|1756
5AKA|1|B|A|1757
5AKA|1|B|U|1758
5AKA|1|B|A|1759
5AKA|1|B|C|1760
5AKA|1|B|C|1761
5AKA|1|B|A|1762
5AKA|1|B|G|1763
5AKA|1|B|C|1764
*
5AKA|1|B|G|1988
5AKA|1|B|G|1989
5AKA|1|B|C|1990

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14

Chain P

50S RIBOSOMAL PROTEIN L19