3D structure

PDB id
5AN9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanism of eIF6 release from the nascent 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUGA*UUUG*CA*UG*CAGAAAA
Length
19 nucleotides
Bulged bases
5AN9|1|N|G|2684, 5AN9|1|N|A|3132, 5AN9|1|N|G|3133, 5AN9|1|N|A|3134
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5AN9_002 not in the Motif Atlas
Homologous match to J5_8C3A_006
Geometric discrepancy: 0.2681
The information below is about J5_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5AN9|1|N|U|2682
5AN9|1|N|U|2683
5AN9|1|N|G|2684
5AN9|1|N|A|2685
*
5AN9|1|N|U|2944
5AN9|1|N|U|2945
5AN9|1|N|U|2946
5AN9|1|N|G|2947
*
5AN9|1|N|C|2960
5AN9|1|N|A|2961
*
5AN9|1|N|U|2983
5AN9|1|N|G|2984
*
5AN9|1|N|C|3131
5AN9|1|N|A|3132
5AN9|1|N|G|3133
5AN9|1|N|A|3134
5AN9|1|N|A|3135
5AN9|1|N|A|3136
5AN9|1|N|A|3137

Current chains

Chain N
26S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1237 s