J5_5APN_003
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 5APN|1|5|U|719, 5APN|1|5|A|784, 5APN|1|5|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5APN_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1045
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5APN|1|5|C|675
5APN|1|5|G|676
5APN|1|5|A|677
5APN|1|5|G|678
*
5APN|1|5|C|702
5APN|1|5|G|703
5APN|1|5|U|704
5APN|1|5|A|705
5APN|1|5|A|706
*
5APN|1|5|U|713
5APN|1|5|G|714
5APN|1|5|A|715
5APN|1|5|A|716
5APN|1|5|C|717
5APN|1|5|G|718
5APN|1|5|U|719
5APN|1|5|A|720
5APN|1|5|G|721
*
5APN|1|5|C|749
5APN|1|5|G|750
5APN|1|5|A|751
*
5APN|1|5|U|782
5APN|1|5|A|783
5APN|1|5|A|784
5APN|1|5|G|785
5APN|1|5|A|786
5APN|1|5|G|787
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36-A
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