J5_5D8B_010
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5D8B|1|YC|A|109, 5D8B|1|YC|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5D8B_010 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0953
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5D8B|1|YC|C|58
5D8B|1|YC|A|59
5D8B|1|YC|A|60
5D8B|1|YC|G|61
*
5D8B|1|YC|C|106
5D8B|1|YC|G|107
5D8B|1|YC|G|108
5D8B|1|YC|A|109
5D8B|1|YC|C|110
5D8B|1|YC|G|111
5D8B|1|YC|G|112
5D8B|1|YC|G|113
*
5D8B|1|YC|C|314
5D8B|1|YC|A|315
5D8B|1|YC|G|316
*
5D8B|1|YC|C|337
5D8B|1|YC|A|338
5D8B|1|YC|C|339
*
5D8B|1|YC|G|350
5D8B|1|YC|G|351
5D8B|1|YC|C|352
5D8B|1|YC|A|353
5D8B|1|YC|G|354
Current chains
- Chain YC
- 16S ribosomal RNA
Nearby chains
- Chain EB
- 50S ribosomal protein L14
- Chain JB
- 50S ribosomal protein L19
- Chain MC
- 30S ribosomal protein S16
- Chain QC
- 30S ribosomal protein S20
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