J5_5DFE_003

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5DFE|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5DFE_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0543

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5DFE|1|RA|C|47
5DFE|1|RA|G|48
5DFE|1|RA|A|49
5DFE|1|RA|U|50
5DFE|1|RA|G|51
5DFE|1|RA|A|52
5DFE|1|RA|A|53
5DFE|1|RA|G|54
*
5DFE|1|RA|C|116
5DFE|1|RA|G|117
5DFE|1|RA|A|118
5DFE|1|RA|A|119
5DFE|1|RA|U|120
5DFE|1|RA|G|121
*
5DFE|1|RA|C|130
5DFE|1|RA|G|131
*
5DFE|1|RA|C|148
5DFE|1|RA|A|149
5DFE|1|RA|C|150
*
5DFE|1|RA|G|176
5DFE|1|RA|G|177
5DFE|1|RA|G|178

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23