J5_5DM6_004

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAUCUCA*UC*GC*GUGAAUAGG*CGC

Length

25 nucleotides

Bulged bases

5DM6|1|X|G|1752, 5DM6|1|X|G|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5DM6_004 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.1717

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5DM6|1|X|G|1674
5DM6|1|X|C|1675
5DM6|1|X|A|1676
5DM6|1|X|A|1677
5DM6|1|X|U|1678
5DM6|1|X|C|1679
5DM6|1|X|U|1680
5DM6|1|X|C|1681
5DM6|1|X|A|1682
*
5DM6|1|X|U|1726
5DM6|1|X|C|1727
*
5DM6|1|X|G|1745
5DM6|1|X|C|1746
*
5DM6|1|X|G|1750
5DM6|1|X|U|1751
5DM6|1|X|G|1752
5DM6|1|X|A|1753
5DM6|1|X|A|1754
5DM6|1|X|U|1755
5DM6|1|X|A|1756
5DM6|1|X|G|1757
5DM6|1|X|G|1758
*
5DM6|1|X|C|1988
5DM6|1|X|G|1989
5DM6|1|X|C|1990

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19