J5_5E7K_003

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5E7K|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5E7K_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0638

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5E7K|1|14|C|47
5E7K|1|14|G|48
5E7K|1|14|A|49
5E7K|1|14|U|50
5E7K|1|14|G|51
5E7K|1|14|A|52
5E7K|1|14|A|53
5E7K|1|14|G|54
*
5E7K|1|14|C|116
5E7K|1|14|G|117
5E7K|1|14|A|118
5E7K|1|14|A|119
5E7K|1|14|U|120
5E7K|1|14|G|121
*
5E7K|1|14|C|130
5E7K|1|14|G|131
*
5E7K|1|14|C|148
5E7K|1|14|A|149
5E7K|1|14|C|150
*
5E7K|1|14|G|176
5E7K|1|14|G|177
5E7K|1|14|G|178

Current chains

Chain 14

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34