J5_5GAE_004

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

5GAE|1|A|U|1758, 5GAE|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5GAE_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.067

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5GAE|1|A|G|1674
5GAE|1|A|C|1675
5GAE|1|A|A|1676
5GAE|1|A|A|1677
5GAE|1|A|A|1678
5GAE|1|A|A|1679
5GAE|1|A|U|1680
5GAE|1|A|G|1681
5GAE|1|A|G|1682
*
5GAE|1|A|C|1706
5GAE|1|A|G|1707
*
5GAE|1|A|U|1751
5GAE|1|A|C|1752
*
5GAE|1|A|G|1756
5GAE|1|A|A|1757
5GAE|1|A|U|1758
5GAE|1|A|A|1759
5GAE|1|A|C|1760
5GAE|1|A|C|1761
5GAE|1|A|A|1762
5GAE|1|A|G|1763
5GAE|1|A|C|1764
*
5GAE|1|A|G|1988
5GAE|1|A|G|1989
5GAE|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19