J5_5HAU_010

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5HAU|1|2A|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5HAU_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0527

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5HAU|1|2A|C|45
5HAU|1|2A|G|46
5HAU|1|2A|A|47
5HAU|1|2A|U|48
5HAU|1|2A|G|49
5HAU|1|2A|A|50
5HAU|1|2A|A|51
5HAU|1|2A|G|52
*
5HAU|1|2A|C|113
5HAU|1|2A|G|114
5HAU|1|2A|A|115
5HAU|1|2A|A|116
5HAU|1|2A|U|117
5HAU|1|2A|G|118
*
5HAU|1|2A|C|127
5HAU|1|2A|G|128
*
5HAU|1|2A|C|147
5HAU|1|2A|A|148
5HAU|1|2A|C|149
*
5HAU|1|2A|G|164
5HAU|1|2A|G|165
5HAU|1|2A|G|166

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L34

Chain 2V

50S ribosomal protein L23