3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
5HAU|1|2A|A|556, 5HAU|1|2A|U|584
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5HAU_012 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.0611
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5HAU|1|2A|C|555
5HAU|1|2A|A|556
5HAU|1|2A|G|557
*
5HAU|1|2A|C|582
5HAU|1|2A|G|583
5HAU|1|2A|U|584
5HAU|1|2A|G|585
5HAU|1|2A|C|586
*
5HAU|1|2A|G|599
5HAU|1|2A|A|600
5HAU|1|2A|G|601
*
5HAU|1|2A|C|1306
5HAU|1|2A|A|1307
*
5HAU|1|2A|U|2038
5HAU|1|2A|G|2039

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 23
50S ribosomal protein L32
Chain 2F
50S ribosomal protein L4
Chain 2S
50S ribosomal protein L20
Chain 2T
50S ribosomal protein L21
Chain 2U
50S ribosomal protein L22

Coloring options:


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