J5_5HCR_004
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5HCR|1|1A|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5HCR_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0482
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5HCR|1|1A|C|606
5HCR|1|1A|G|607
5HCR|1|1A|A|608
5HCR|1|1A|C|609
5HCR|1|1A|U|610
5HCR|1|1A|C|611
*
5HCR|1|1A|G|714
5HCR|1|1A|G|715
5HCR|1|1A|A|716
5HCR|1|1A|C|717
*
5HCR|1|1A|G|855
5HCR|1|1A|U|856
5HCR|1|1A|U|857
5HCR|1|1A|C|858
*
5HCR|1|1A|G|1239
5HCR|1|1A|C|1240
*
5HCR|1|1A|G|1295
5HCR|1|1A|C|1296
5HCR|1|1A|G|1297
5HCR|1|1A|A|1298
5HCR|1|1A|A|1299
5HCR|1|1A|U|1300
5HCR|1|1A|G|1301
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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