J5_5HKV_003
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UG*CA
- Length
- 15 nucleotides
- Bulged bases
- 5HKV|1|X|A|577, 5HKV|1|X|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5HKV_003 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.0557
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HKV|1|X|U|576
5HKV|1|X|A|577
5HKV|1|X|G|578
*
5HKV|1|X|C|603
5HKV|1|X|G|604
5HKV|1|X|U|605
5HKV|1|X|G|606
5HKV|1|X|C|607
*
5HKV|1|X|G|620
5HKV|1|X|A|621
5HKV|1|X|A|622
*
5HKV|1|X|U|1299
5HKV|1|X|G|1300
*
5HKV|1|X|C|2044
5HKV|1|X|A|2045
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain G
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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