J5_5HKV_007
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5HKV|1|X|U|2103, 5HKV|1|X|G|2455, 5HKV|1|X|G|2456, 5HKV|1|X|A|2457, 5HKV|1|X|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5HKV_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.059
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HKV|1|X|U|2101
5HKV|1|X|U|2102
5HKV|1|X|U|2103
5HKV|1|X|A|2104
*
5HKV|1|X|U|2270
5HKV|1|X|U|2271
5HKV|1|X|U|2272
5HKV|1|X|G|2273
*
5HKV|1|X|C|2285
5HKV|1|X|G|2286
*
5HKV|1|X|C|2308
5HKV|1|X|G|2309
*
5HKV|1|X|C|2454
5HKV|1|X|G|2455
5HKV|1|X|G|2456
5HKV|1|X|A|2457
5HKV|1|X|U|2458
5HKV|1|X|A|2459
5HKV|1|X|A|2460
5HKV|1|X|A|2461
5HKV|1|X|A|2462
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
Coloring options: