J5_5IB8_014
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5IB8|1|1H|A|532, 5IB8|1|1H|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5IB8_014 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0551
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IB8|1|1H|C|531
5IB8|1|1H|A|532
5IB8|1|1H|G|533
*
5IB8|1|1H|C|560
5IB8|1|1H|G|561
5IB8|1|1H|U|562
5IB8|1|1H|G|563
5IB8|1|1H|C|564
*
5IB8|1|1H|G|577
5IB8|1|1H|A|578
5IB8|1|1H|G|579
*
5IB8|1|1H|C|1261
5IB8|1|1H|A|1262
*
5IB8|1|1H|U|2017
5IB8|1|1H|G|2018
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
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