J5_5IBB_003

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5IBB|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IBB_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0551

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IBB|1|14|C|47
5IBB|1|14|G|48
5IBB|1|14|A|49
5IBB|1|14|U|50
5IBB|1|14|G|51
5IBB|1|14|A|52
5IBB|1|14|A|53
5IBB|1|14|G|54
*
5IBB|1|14|C|116
5IBB|1|14|G|117
5IBB|1|14|A|118
5IBB|1|14|A|119
5IBB|1|14|U|120
5IBB|1|14|G|121
*
5IBB|1|14|C|130
5IBB|1|14|G|131
*
5IBB|1|14|C|148
5IBB|1|14|A|149
5IBB|1|14|C|150
*
5IBB|1|14|G|176
5IBB|1|14|G|177
5IBB|1|14|G|178

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34