J5_5IT8_010
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 5IT8|1|CA|U|1758, 5IT8|1|CA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5IT8_010 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0558
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5IT8|1|CA|G|1674
5IT8|1|CA|C|1675
5IT8|1|CA|A|1676
5IT8|1|CA|A|1677
5IT8|1|CA|A|1678
5IT8|1|CA|A|1679
5IT8|1|CA|U|1680
5IT8|1|CA|G|1681
5IT8|1|CA|G|1682
*
5IT8|1|CA|C|1706
5IT8|1|CA|G|1707
*
5IT8|1|CA|U|1751
5IT8|1|CA|C|1752
*
5IT8|1|CA|G|1756
5IT8|1|CA|A|1757
5IT8|1|CA|U|1758
5IT8|1|CA|A|1759
5IT8|1|CA|C|1760
5IT8|1|CA|C|1761
5IT8|1|CA|A|1762
5IT8|1|CA|G|1763
5IT8|1|CA|C|1764
*
5IT8|1|CA|G|1988
5IT8|1|CA|G|1989
5IT8|1|CA|C|1990
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CD
- 50S ribosomal protein L3
- Chain CL
- 50S ribosomal protein L14
- Chain CQ
- 50S ribosomal protein L19
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