J5_5J3C_003

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5J3C|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J3C_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0478

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5J3C|1|RA|C|47
5J3C|1|RA|G|48
5J3C|1|RA|A|49
5J3C|1|RA|U|50
5J3C|1|RA|G|51
5J3C|1|RA|A|52
5J3C|1|RA|A|53
5J3C|1|RA|G|54
*
5J3C|1|RA|C|116
5J3C|1|RA|G|117
5J3C|1|RA|A|118
5J3C|1|RA|A|119
5J3C|1|RA|U|120
5J3C|1|RA|G|121
*
5J3C|1|RA|C|130
5J3C|1|RA|G|131
*
5J3C|1|RA|C|148
5J3C|1|RA|A|149
5J3C|1|RA|C|150
*
5J3C|1|RA|G|176
5J3C|1|RA|G|177
5J3C|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23