J5_5J4D_011

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5J4D|1|FB|A|109, 5J4D|1|FB|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J4D_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0905

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|FB|C|58
5J4D|1|FB|A|59
5J4D|1|FB|A|60
5J4D|1|FB|G|61
*
5J4D|1|FB|C|106
5J4D|1|FB|G|107
5J4D|1|FB|G|108
5J4D|1|FB|A|109
5J4D|1|FB|C|110
5J4D|1|FB|G|111
5J4D|1|FB|G|112
5J4D|1|FB|G|113
*
5J4D|1|FB|C|314
5J4D|1|FB|A|315
5J4D|1|FB|G|316
*
5J4D|1|FB|C|337
5J4D|1|FB|A|338
5J4D|1|FB|C|339
*
5J4D|1|FB|G|350
5J4D|1|FB|G|351
5J4D|1|FB|C|352
5J4D|1|FB|A|353
5J4D|1|FB|G|354

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S16

Chain HD

30S ribosomal protein S20

Chain QB

50S ribosomal protein L14