J5_5J4D_014
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5J4D|1|GB|A|532, 5J4D|1|GB|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J4D_014 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0828
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|GB|C|531
5J4D|1|GB|A|532
5J4D|1|GB|G|533
*
5J4D|1|GB|C|560
5J4D|1|GB|G|561
5J4D|1|GB|U|562
5J4D|1|GB|G|563
5J4D|1|GB|C|564
*
5J4D|1|GB|G|577
5J4D|1|GB|A|578
5J4D|1|GB|G|579
*
5J4D|1|GB|C|1261
5J4D|1|GB|A|1262
*
5J4D|1|GB|U|2017
5J4D|1|GB|G|2018
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain HC
- 50S ribosomal protein L32
- Chain LB
- 50S ribosomal protein L4
- Chain WB
- 50S ribosomal protein L20
- Chain XB
- 50S ribosomal protein L21
- Chain YB
- 50S ribosomal protein L22
Coloring options: