J5_5J88_009
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5J88|1|CA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J88_009 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0686
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5J88|1|CA|C|584
5J88|1|CA|G|585
5J88|1|CA|A|586
5J88|1|CA|C|587
5J88|1|CA|U|588
5J88|1|CA|U|589
*
5J88|1|CA|A|668
5J88|1|CA|G|669
5J88|1|CA|A|670
5J88|1|CA|C|671
*
5J88|1|CA|G|809
5J88|1|CA|U|810
5J88|1|CA|U|811
5J88|1|CA|C|812
*
5J88|1|CA|G|1195
5J88|1|CA|C|1196
*
5J88|1|CA|G|1250
5J88|1|CA|C|1251
5J88|1|CA|G|1252
5J88|1|CA|A|1253
5J88|1|CA|A|1254
5J88|1|CA|U|1255
5J88|1|CA|G|1256
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C4
- 50S ribosomal protein L35
- Chain CE
- 50S ribosomal protein L4
- Chain CM
- 50S ribosomal protein L15
- Chain CR
- 50S ribosomal protein L20
- Chain CS
- 50S ribosomal protein L21
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