J5_5J8B_004
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5J8B|1|A|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J8B_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0486
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|A|C|606
5J8B|1|A|G|607
5J8B|1|A|A|608
5J8B|1|A|C|609
5J8B|1|A|U|610
5J8B|1|A|C|611
*
5J8B|1|A|G|714
5J8B|1|A|G|715
5J8B|1|A|A|716
5J8B|1|A|C|717
*
5J8B|1|A|G|855
5J8B|1|A|U|856
5J8B|1|A|U|857
5J8B|1|A|C|858
*
5J8B|1|A|G|1239
5J8B|1|A|C|1240
*
5J8B|1|A|G|1295
5J8B|1|A|C|1296
5J8B|1|A|G|1297
5J8B|1|A|A|1298
5J8B|1|A|A|1299
5J8B|1|A|U|1300
5J8B|1|A|G|1301
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
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