J5_5J8B_009
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J8B_009 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0681
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5J8B|1|a|C|37
5J8B|1|a|U|38
5J8B|1|a|G|39
5J8B|1|a|G|40
*
5J8B|1|a|C|399
5J8B|1|a|U|400
5J8B|1|a|U|401
5J8B|1|a|G|402
*
5J8B|1|a|C|432
5J8B|1|a|U|433
5J8B|1|a|G|434
5J8B|1|a|A|435
5J8B|1|a|A|436
5J8B|1|a|C|437
*
5J8B|1|a|G|477
5J8B|1|a|G|478
5J8B|1|a|U|479
5J8B|1|a|A|480
5J8B|1|a|A|481
5J8B|1|a|U|482
5J8B|1|a|A|483
5J8B|1|a|G|484
*
5J8B|1|a|C|529
5J8B|1|a|G|530
5J8B|1|a|A|531
5J8B|1|a|G|532
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: