J5_5JUO_006
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5JUO|1|B|G|800, 5JUO|1|B|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUO_006 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1747
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUO|1|B|G|658
5JUO|1|B|G|659
5JUO|1|B|A|660
5JUO|1|B|G|661
5JUO|1|B|U|662
5JUO|1|B|C|663
*
5JUO|1|B|G|799
5JUO|1|B|G|800
5JUO|1|B|A|801
5JUO|1|B|C|802
*
5JUO|1|B|G|941
5JUO|1|B|U|942
5JUO|1|B|U|943
5JUO|1|B|C|944
*
5JUO|1|B|G|1375
5JUO|1|B|C|1376
*
5JUO|1|B|G|1431
5JUO|1|B|C|1432
5JUO|1|B|A|1433
5JUO|1|B|G|1434
5JUO|1|B|A|1435
5JUO|1|B|U|1436
5JUO|1|B|C|1437
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain FA
- uL15 (yeast L28)
- Chain H
- uL4 (yeast L4)
- Chain JA
- eL32 (yeast L32)
- Chain Q
- eL13 (yeast L13)
Coloring options: