J5_5JUP_006
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 5JUP|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUP_006 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1043
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUP|1|B|A|20
5JUP|1|B|G|21
5JUP|1|B|G|22
*
5JUP|1|C|C|35
5JUP|1|C|G|36
5JUP|1|C|A|37
5JUP|1|C|U|38
5JUP|1|C|G|39
5JUP|1|C|A|40
5JUP|1|C|A|41
5JUP|1|C|G|42
*
5JUP|1|C|U|102
5JUP|1|C|G|103
5JUP|1|C|A|104
5JUP|1|C|A|105
5JUP|1|C|C|106
5JUP|1|C|G|107
*
5JUP|1|C|C|115
5JUP|1|C|G|116
*
5JUP|1|C|C|137
5JUP|1|C|A|138
5JUP|1|C|U|139
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
- Chain S
- eL15 (yeast L15)
Coloring options: