J5_5JUP_008
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 5JUP|1|B|U|719, 5JUP|1|B|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUP_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0885
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5JUP|1|B|C|675
5JUP|1|B|G|676
5JUP|1|B|A|677
5JUP|1|B|G|678
*
5JUP|1|B|C|702
5JUP|1|B|G|703
5JUP|1|B|U|704
5JUP|1|B|A|705
5JUP|1|B|A|706
*
5JUP|1|B|U|713
5JUP|1|B|G|714
5JUP|1|B|A|715
5JUP|1|B|A|716
5JUP|1|B|C|717
5JUP|1|B|G|718
5JUP|1|B|U|719
5JUP|1|B|A|720
5JUP|1|B|G|721
*
5JUP|1|B|C|749
5JUP|1|B|G|750
5JUP|1|B|A|751
*
5JUP|1|B|U|782
5JUP|1|B|A|783
5JUP|1|B|A|784
5JUP|1|B|G|785
5JUP|1|B|A|786
5JUP|1|B|G|787
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain GA
- eL29 (yeast L29)
- Chain H
- uL4 (yeast L4)
- Chain NA
- eL36 (yeast L36)
- Chain Q
- eL13 (yeast L13)
- Chain V
- eL18 (yeast L18)
Coloring options: