J5_5JUT_002
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5JUT|1|A|A|93, 5JUT|1|A|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUT_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1407
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JUT|1|A|C|54
5JUT|1|A|A|55
5JUT|1|A|U|56
5JUT|1|A|G|57
*
5JUT|1|A|C|90
5JUT|1|A|G|91
5JUT|1|A|A|92
5JUT|1|A|A|93
5JUT|1|A|U|94
5JUT|1|A|G|95
5JUT|1|A|G|96
5JUT|1|A|C|97
*
5JUT|1|A|G|386
5JUT|1|A|A|387
5JUT|1|A|G|388
*
5JUT|1|A|C|409
5JUT|1|A|A|410
5JUT|1|A|C|411
*
5JUT|1|A|G|422
5JUT|1|A|G|423
5JUT|1|A|C|424
5JUT|1|A|A|425
5JUT|1|A|G|426
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain BB
- eS4 (yeast S4)
- Chain DB
- eS6 (yeast S6)
- Chain FB
- eS8 (yeast S8)
- Chain GB
- uS4 (yeast S9)
- Chain VB
- eS24 (yeast S24)
Coloring options: