J5_5K0Y_002
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5K0Y|1|A|U|55, 5K0Y|1|A|A|92, 5K0Y|1|A|C|462
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5K0Y_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1337
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|C|53
5K0Y|1|A|A|54
5K0Y|1|A|U|55
5K0Y|1|A|G|56
*
5K0Y|1|A|C|89
5K0Y|1|A|G|90
5K0Y|1|A|A|91
5K0Y|1|A|A|92
5K0Y|1|A|U|93
5K0Y|1|A|G|94
5K0Y|1|A|G|95
5K0Y|1|A|C|96
*
5K0Y|1|A|G|424
5K0Y|1|A|A|425
5K0Y|1|A|G|426
*
5K0Y|1|A|C|447
5K0Y|1|A|A|448
5K0Y|1|A|C|449
*
5K0Y|1|A|G|460
5K0Y|1|A|G|461
5K0Y|1|A|C|462
5K0Y|1|A|A|463
5K0Y|1|A|G|464
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain O
- Eukaryotic translation initiation factor 3 subunit G
- Chain o
- 40S ribosomal protein S8
- Chain q
- 40S ribosomal protein S6
- Chain s
- 40S ribosomal protein S24
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