J5_5KCR_006
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5KCR|1|1A|U|2076, 5KCR|1|1A|G|2428, 5KCR|1|1A|G|2429||A, 5KCR|1|1A|A|2430||A, 5KCR|1|1A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCR|1|1A|U|2074
5KCR|1|1A|U|2075
5KCR|1|1A|U|2076
5KCR|1|1A|A|2077
*
5KCR|1|1A|U|2243
5KCR|1|1A|U|2244
5KCR|1|1A|U|2245
5KCR|1|1A|G|2246
*
5KCR|1|1A|C|2258
5KCR|1|1A|U|2259
*
5KCR|1|1A|A|2281
5KCR|1|1A|G|2282
*
5KCR|1|1A|C|2427
5KCR|1|1A|G|2428
5KCR|1|1A|G|2429||A
5KCR|1|1A|A|2430||A
5KCR|1|1A|U|2431
5KCR|1|1A|A|2432
5KCR|1|1A|A|2433
5KCR|1|1A|A|2434
5KCR|1|1A|A|2435
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
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