J5_5KPX_006
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5KPX|1|27|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5KPX_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0989
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5KPX|1|27|C|584
5KPX|1|27|G|585
5KPX|1|27|A|586
5KPX|1|27|C|587
5KPX|1|27|U|588
5KPX|1|27|U|589
*
5KPX|1|27|A|668
5KPX|1|27|G|669
5KPX|1|27|A|670
5KPX|1|27|C|671
*
5KPX|1|27|G|809
5KPX|1|27|U|810
5KPX|1|27|U|811
5KPX|1|27|C|812
*
5KPX|1|27|G|1195
5KPX|1|27|C|1196
*
5KPX|1|27|G|1250
5KPX|1|27|C|1251
5KPX|1|27|G|1252
5KPX|1|27|A|1253
5KPX|1|27|A|1254
5KPX|1|27|U|1255
5KPX|1|27|G|1256
Current chains
- Chain 27
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L21
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