J5_5L3P_008

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

5L3P|1|a|A|109, 5L3P|1|a|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5L3P_008 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1282

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5L3P|1|a|C|58
5L3P|1|a|A|59
5L3P|1|a|A|60
5L3P|1|a|G|61
*
5L3P|1|a|C|106
5L3P|1|a|G|107
5L3P|1|a|G|108
5L3P|1|a|A|109
5L3P|1|a|C|110
5L3P|1|a|G|111
5L3P|1|a|G|112
5L3P|1|a|G|113
*
5L3P|1|a|C|314
5L3P|1|a|A|315
5L3P|1|a|C|316
*
5L3P|1|a|G|337
5L3P|1|a|A|338
5L3P|1|a|C|339
*
5L3P|1|a|G|350
5L3P|1|a|G|351
5L3P|1|a|C|352
5L3P|1|a|A|353
5L3P|1|a|G|354

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20