J5_5LI0_010
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5LI0|1|A|U|2103, 5LI0|1|A|G|2455, 5LI0|1|A|G|2456, 5LI0|1|A|A|2457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5LI0_010 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1429
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LI0|1|A|U|2101
5LI0|1|A|U|2102
5LI0|1|A|U|2103
5LI0|1|A|A|2104
*
5LI0|1|A|U|2270
5LI0|1|A|U|2271
5LI0|1|A|U|2272
5LI0|1|A|G|2273
*
5LI0|1|A|C|2285
5LI0|1|A|G|2286
*
5LI0|1|A|C|2308
5LI0|1|A|G|2309
*
5LI0|1|A|C|2454
5LI0|1|A|G|2455
5LI0|1|A|G|2456
5LI0|1|A|A|2457
5LI0|1|A|U|2458
5LI0|1|A|A|2459
5LI0|1|A|A|2460
5LI0|1|A|A|2461
5LI0|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain D
- 50S ribosomal protein L2
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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