J5_5LMV_001

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LMV_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0922

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5LMV|1|A|C|36
5LMV|1|A|U|37
5LMV|1|A|G|38
5LMV|1|A|G|39
*
5LMV|1|A|C|403
5LMV|1|A|U|404
5LMV|1|A|U|405
5LMV|1|A|G|406
*
5LMV|1|A|C|436
5LMV|1|A|U|437
5LMV|1|A|G|438
5LMV|1|A|A|439
5LMV|1|A|A|441
5LMV|1|A|C|442
*
5LMV|1|A|G|492
5LMV|1|A|G|493
5LMV|1|A|U|494
5LMV|1|A|A|495
5LMV|1|A|A|496
5LMV|1|A|U|498
5LMV|1|A|A|499
5LMV|1|A|G|500
*
5LMV|1|A|C|545
5LMV|1|A|G|546
5LMV|1|A|A|547
5LMV|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12

Chain a

Translation initiation factor IF-2