J5_5LMV_002

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5LMV|1|A|A|109, 5LMV|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LMV_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0988

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5LMV|1|A|C|58
5LMV|1|A|A|59
5LMV|1|A|A|60
5LMV|1|A|G|61
*
5LMV|1|A|C|106
5LMV|1|A|G|107
5LMV|1|A|G|108
5LMV|1|A|A|109
5LMV|1|A|C|110
5LMV|1|A|G|111
5LMV|1|A|G|112
5LMV|1|A|G|113
*
5LMV|1|A|C|314
5LMV|1|A|A|315
5LMV|1|A|G|316
*
5LMV|1|A|C|337
5LMV|1|A|A|338
5LMV|1|A|C|339
*
5LMV|1|A|G|350
5LMV|1|A|G|351
5LMV|1|A|C|352
5LMV|1|A|A|353
5LMV|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20

Chain a

Translation initiation factor IF-2