J5_5LZA_006
3D structure
- PDB id
- 5LZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5LZA|1|A|U|2076, 5LZA|1|A|G|2428, 5LZA|1|A|G|2429, 5LZA|1|A|A|2430, 5LZA|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5LZA_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0886
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5LZA|1|A|U|2074
5LZA|1|A|U|2075
5LZA|1|A|U|2076
5LZA|1|A|A|2077
*
5LZA|1|A|U|2243
5LZA|1|A|U|2244
5LZA|1|A|U|2245
5LZA|1|A|G|2246
*
5LZA|1|A|C|2258
5LZA|1|A|U|2259
*
5LZA|1|A|A|2281
5LZA|1|A|G|2282
*
5LZA|1|A|C|2427
5LZA|1|A|G|2428
5LZA|1|A|G|2429
5LZA|1|A|A|2430
5LZA|1|A|U|2431
5LZA|1|A|A|2432
5LZA|1|A|A|2433
5LZA|1|A|A|2434
5LZA|1|A|A|2435
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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