J5_5LZF_011
3D structure
- PDB id
- 5LZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGUC*GG*UU*GGG*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5LZF_011 not in the Motif Atlas
- Homologous match to J5_3W3S_001
- Geometric discrepancy: 0.5871
- The information below is about J5_3W3S_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59638.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZF|1|y|C|7
5LZF|1|y|G|8
5LZF|1|y|U|9
5LZF|1|y|C|10
*
5LZF|1|y|G|25
5LZF|1|y|G|26
*
5LZF|1|y|U|44
5LZF|1|y|U|45
*
5LZF|1|y|G|47|||Q
5LZF|1|y|G|48
5LZF|1|y|G|49
*
5LZF|1|y|U|65
5LZF|1|y|G|66
Current chains
- Chain y
- fMetSec-tRNASec
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
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