J5_5LZU_006

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

5LZU|1|9|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LZU_006 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0791

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZU|1|9|C|30
5LZU|1|9|U|31
5LZU|1|9|U|32
5LZU|1|9|G|33
5LZU|1|9|U|34
*
5LZU|1|9|A|521
5LZU|1|9|A|522
5LZU|1|9|A|523
5LZU|1|9|U|524
5LZU|1|9|A|525
5LZU|1|9|A|526
5LZU|1|9|C|527
*
5LZU|1|9|G|558
5LZU|1|9|G|559
5LZU|1|9|A|560
5LZU|1|9|A|561
5LZU|1|9|U|562
5LZU|1|9|G|563
*
5LZU|1|9|C|592
5LZU|1|9|C|593
5LZU|1|9|A|594
5LZU|1|9|U|595
*
5LZU|1|9|A|641
5LZU|1|9|U|642
5LZU|1|9|A|643
5LZU|1|9|G|644

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12

Chain ee

eS30