J5_5M1J_002
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5M1J|1|14|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5M1J_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0935
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|14|G|658
5M1J|1|14|G|659
5M1J|1|14|A|660
5M1J|1|14|G|661
5M1J|1|14|U|662
5M1J|1|14|C|663
*
5M1J|1|14|G|799
5M1J|1|14|G|800
5M1J|1|14|A|801
5M1J|1|14|C|802
*
5M1J|1|14|G|941
5M1J|1|14|U|942
5M1J|1|14|U|943
5M1J|1|14|C|944
*
5M1J|1|14|G|1375
5M1J|1|14|C|1376
*
5M1J|1|14|G|1431
5M1J|1|14|C|1432
5M1J|1|14|A|1433
5M1J|1|14|G|1434
5M1J|1|14|A|1435
5M1J|1|14|U|1436
5M1J|1|14|C|1437
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 44
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C5
- 60S ribosomal protein L4-A
- Chain L5
- 60S ribosomal protein L13-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain a5
- 60S ribosomal protein L28
- Chain e5
- 60S ribosomal protein L32
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