J5_5M1J_003
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 5M1J|1|14|U|719, 5M1J|1|14|A|784, 5M1J|1|14|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5M1J_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0961
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5M1J|1|14|C|675
5M1J|1|14|G|676
5M1J|1|14|A|677
5M1J|1|14|G|678
*
5M1J|1|14|C|702
5M1J|1|14|G|703
5M1J|1|14|U|704
5M1J|1|14|A|705
5M1J|1|14|A|706
*
5M1J|1|14|U|713
5M1J|1|14|G|714
5M1J|1|14|A|715
5M1J|1|14|A|716
5M1J|1|14|C|717
5M1J|1|14|G|718
5M1J|1|14|U|719
5M1J|1|14|A|720
5M1J|1|14|G|721
*
5M1J|1|14|C|749
5M1J|1|14|G|750
5M1J|1|14|A|751
*
5M1J|1|14|U|782
5M1J|1|14|A|783
5M1J|1|14|A|784
5M1J|1|14|G|785
5M1J|1|14|A|786
5M1J|1|14|G|787
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain C5
- 60S ribosomal protein L4-A
- Chain L5
- 60S ribosomal protein L13-A
- Chain Q5
- 60S ribosomal protein L18-A
- Chain a5
- 60S ribosomal protein L28
- Chain b5
- 60S ribosomal protein L29
- Chain i5
- 60S ribosomal protein L36-A
Coloring options: