J5_5MDY_003
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5MDY|1|1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MDY_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.049
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MDY|1|1|C|584
5MDY|1|1|G|585
5MDY|1|1|A|586
5MDY|1|1|C|587
5MDY|1|1|U|588
5MDY|1|1|U|589
*
5MDY|1|1|A|668
5MDY|1|1|G|669
5MDY|1|1|A|670
5MDY|1|1|C|671
*
5MDY|1|1|G|809
5MDY|1|1|U|810
5MDY|1|1|U|811
5MDY|1|1|C|812
*
5MDY|1|1|G|1195
5MDY|1|1|C|1196
*
5MDY|1|1|G|1250
5MDY|1|1|C|1251
5MDY|1|1|G|1252
5MDY|1|1|A|1253
5MDY|1|1|A|1254
5MDY|1|1|U|1255
5MDY|1|1|G|1256
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain e
- 50S ribosomal protein L35
Coloring options: