J5_5MDZ_006
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5MDZ|1|1|U|2076, 5MDZ|1|1|G|2428, 5MDZ|1|1|G|2429, 5MDZ|1|1|A|2430, 5MDZ|1|1|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MDZ_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0791
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MDZ|1|1|U|2074
5MDZ|1|1|U|2075
5MDZ|1|1|U|2076
5MDZ|1|1|A|2077
*
5MDZ|1|1|U|2243
5MDZ|1|1|U|2244
5MDZ|1|1|U|2245
5MDZ|1|1|G|2246
*
5MDZ|1|1|C|2258
5MDZ|1|1|U|2259
*
5MDZ|1|1|A|2281
5MDZ|1|1|G|2282
*
5MDZ|1|1|C|2427
5MDZ|1|1|G|2428
5MDZ|1|1|G|2429
5MDZ|1|1|A|2430
5MDZ|1|1|U|2431
5MDZ|1|1|A|2432
5MDZ|1|1|A|2433
5MDZ|1|1|A|2434
5MDZ|1|1|A|2435
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
Coloring options: