J5_5MEI_001
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 5MEI|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MEI_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0527
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MEI|1|1|A|20
5MEI|1|1|G|21
5MEI|1|1|G|22
*
5MEI|1|4|C|35
5MEI|1|4|G|36
5MEI|1|4|A|37
5MEI|1|4|U|38
5MEI|1|4|G|39
5MEI|1|4|A|40
5MEI|1|4|A|41
5MEI|1|4|G|42
*
5MEI|1|4|U|102
5MEI|1|4|G|103
5MEI|1|4|A|104
5MEI|1|4|A|105
5MEI|1|4|C|106
5MEI|1|4|G|107
*
5MEI|1|4|C|115
5MEI|1|4|G|116
*
5MEI|1|4|C|137
5MEI|1|4|A|138
5MEI|1|4|U|139
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AI
- 60S ribosomal protein L35-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain AM
- 60S ribosomal protein L39
- Chain v
- 60S ribosomal protein L15-A
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