J5_5MLC_001

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGGAAG*CGAAUA*UU*GAAC*GAG

Length

23 nucleotides

Bulged bases

5MLC|1|A|G|49, 5MLC|1|A|A|133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5MLC_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.169

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5MLC|1|A|C|46
5MLC|1|A|G|47
5MLC|1|A|A|48
5MLC|1|A|G|49
5MLC|1|A|G|50
5MLC|1|A|A|51
5MLC|1|A|A|52
5MLC|1|A|G|53
*
5MLC|1|A|C|114
5MLC|1|A|G|115
5MLC|1|A|A|116
5MLC|1|A|A|117
5MLC|1|A|U|118
5MLC|1|A|A|119
*
5MLC|1|A|U|128
5MLC|1|A|U|129
*
5MLC|1|A|G|132
5MLC|1|A|A|133
5MLC|1|A|A|134
5MLC|1|A|C|135
*
5MLC|1|A|G|161
5MLC|1|A|A|162
5MLC|1|A|G|163

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain V

50S ribosomal protein L23, chloroplastic

Chain Z

50S ribosomal protein L29, chloroplastic