J5_5MLC_002
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CU*AG
- Length
- 15 nucleotides
- Bulged bases
- 5MLC|1|A|A|543, 5MLC|1|A|U|572
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MLC_002 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1452
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5MLC|1|A|C|542
5MLC|1|A|A|543
5MLC|1|A|G|544
*
5MLC|1|A|C|570
5MLC|1|A|G|571
5MLC|1|A|U|572
5MLC|1|A|G|573
5MLC|1|A|C|574
*
5MLC|1|A|G|587
5MLC|1|A|A|588
5MLC|1|A|G|589
*
5MLC|1|A|C|1282
5MLC|1|A|U|1283
*
5MLC|1|A|A|2031
5MLC|1|A|G|2032
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 2
- 50S ribosomal protein L32, chloroplastic
- Chain F
- 50S ribosomal protein L4, chloroplastic
- Chain S
- 50S ribosomal protein L20, chloroplastic
- Chain T
- 50S ribosomal protein L21, chloroplastic
- Chain U
- 50S ribosomal protein L22, chloroplastic
Coloring options: