J5_5MRF_001
3D structure
- PDB id
- 5MRF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.97 Å
Loop
- Sequence
- CAA*UGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5MRF|1|A|A|429, 5MRF|1|A|U|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MRF_001 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1212
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5MRF|1|A|C|428
5MRF|1|A|A|429
5MRF|1|A|A|430
*
5MRF|1|A|U|459
5MRF|1|A|G|460
5MRF|1|A|U|461
5MRF|1|A|A|462
5MRF|1|A|C|463
*
5MRF|1|A|G|476
5MRF|1|A|G|477
5MRF|1|A|G|478
*
5MRF|1|A|C|1294
5MRF|1|A|A|1295
*
5MRF|1|A|U|1917
5MRF|1|A|G|1918
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain D
- uL4m
- Chain N
- bL21m
- Chain O
- uL22m
- Chain W
- bL32m
Coloring options: