J5_5MRF_003
3D structure
- PDB id
- 5MRF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.97 Å
Loop
- Sequence
- UUUA*UUUU*AU*AG*CGAAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5MRF|1|A|U|1976, 5MRF|1|A|G|2694, 5MRF|1|A|A|2695, 5MRF|1|A|A|2696, 5MRF|1|A|U|2697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MRF_003 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1173
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MRF|1|A|U|1974
5MRF|1|A|U|1975
5MRF|1|A|U|1976
5MRF|1|A|A|1977
*
5MRF|1|A|U|2269
5MRF|1|A|U|2270
5MRF|1|A|U|2271
5MRF|1|A|U|2272
*
5MRF|1|A|A|2284
5MRF|1|A|U|2285
*
5MRF|1|A|A|2308
5MRF|1|A|G|2309
*
5MRF|1|A|C|2693
5MRF|1|A|G|2694
5MRF|1|A|A|2695
5MRF|1|A|A|2696
5MRF|1|A|U|2697
5MRF|1|A|A|2698
5MRF|1|A|A|2699
5MRF|1|A|A|2700
5MRF|1|A|A|2701
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain B
- uL2m
- Chain J
- uL15m
- Chain R
- bL27m
- Chain S
- bL28m
- Chain X
- bL33m
- Chain Z
- bL35m
- Chain bb
- Transfer RNA; tRNA
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