J5_5NDK_002
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5NDK|1|13|A|748, 5NDK|1|13|C|993
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NDK_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0785
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|13|C|704
5NDK|1|13|A|705
5NDK|1|13|A|706
5NDK|1|13|G|707
*
5NDK|1|13|C|745
5NDK|1|13|G|746
5NDK|1|13|G|747
5NDK|1|13|A|748
5NDK|1|13|C|749
5NDK|1|13|G|750
5NDK|1|13|G|751
5NDK|1|13|G|752
*
5NDK|1|13|C|955
5NDK|1|13|A|956
5NDK|1|13|G|957
*
5NDK|1|13|C|978
5NDK|1|13|A|979
5NDK|1|13|C|980
*
5NDK|1|13|G|991
5NDK|1|13|G|992
5NDK|1|13|C|993
5NDK|1|13|A|994
5NDK|1|13|G|995
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 68
- 50S ribosomal protein L14
- Chain 7I
- 30S ribosomal protein S16
- Chain B8
- 50S ribosomal protein L19
- Chain BI
- 30S ribosomal protein S20
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